STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcDArginine/ornithine antiporter [Lactobacillus sakei subsp. sakei 23K]; arginine/ornithine antiporter; TIGR03810; gene_197; identified by MetaGeneAnnotator; putative. (252 aa)    
Predicted Functional Partners:
GAK47147.1
Oligo-1,6-glucosidase; Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins; cd11333; COG: COG0366; Pfam: PF00128; InterPro: IPR013781; Ca binding site [ion binding]; Domain of unknown function (DUF3459); pfam11941; alpha,alpha-phosphotrehalase; TIGR02403; catalytic site [active]; gene_245; identified by MetaGeneAnnotator; putative; oligo-1,6-glucosidase [Lactobacillus brevis subsp. gravesensis ATCC 27305].
  
 0.810
arcA
Arginine deiminase [Lactobacillus brevis ATCC 367]; arginine deiminase; Provisional; catalyzes the degradation of arginine to citruline and ammonia; gene_307; identified by MetaGeneAnnotator; putative.
 
  
 0.571
GAK47098.1
Hypothetical protein; Gene_196; identified by MetaGeneAnnotator; putative.
       0.499
GAK47824.1
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine..; cd00609; aminotransferase [Lactobacillus buchneri CD034]; catalytic residue [active]; gene_922; homodimer interface [polypeptide binding]; identified by MetaGeneAnnotator; putative; pyridoxal 5'-phosphate binding site [chemical binding]; transaminase; Validated.
 
 
 0.473
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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