STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47137.1ABC-type antimicrobial peptide transport system, permease component; Gene_235; identified by MetaGeneAnnotator; putative. (655 aa)    
Predicted Functional Partners:
GAK47138.1
ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein [Streptococcus parasanguinis FW213]; ABC transporter signature motif; ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; COG1136; ATP binding site [chemical binding]; D-loop; H-loop/switch region; Q-loop/lid; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered t [...]
 0.995
GAK47314.1
ABC transporter signature motif; ABC transporter, ATP-binding protein [Lactobacillus kisonensis F0435]; ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; COG1136; ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; COG4591; ATP binding site [chemical binding]; D-loop; FtsX-like permease family; pfam02687; H-loop/switch region; KEGG: llk:LLKF_0731 9.0e-144 yhcA; ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00; MacB-like periplasmic [...]
  
 0.983
GAK48695.1
Conjugative transposon protein TcpC; pfam12642; Psort location: Cytoplasmic, score: 7.50; overlaps another CDS with the same product name; conserved domain protein [Enterococcus faecium TX0133a01]; gene_1793; identified by MetaGeneAnnotator; putative.
  
 0.906
GAK47697.1
Hypothetical protein; Gene_795; identified by MetaGeneAnnotator; putative.
  
 
 0.900
GAK48274.1
ABC transporter ATP-binding protein [Enterococcus hirae ATCC 9790]; ABC transporter signature motif; ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; COG1136; ATP binding site [chemical binding]; COG1136 ABC-type antimicrobial peptide transport system, ATPase component; D-loop; H-loop/switch region; Q-loop/lid; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustere [...]
 
 0.886
GAK48540.1
ABC transporter ATP-binding protein [Streptococcus thermophilus JIM 8232]; ABC transporter signature motif; ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; COG1136; ATP binding site [chemical binding]; D-loop; H-loop/switch region; Q-loop/lid; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together..; cd03255; Walker A/P-loop; Walker B; gene_1638; identif [...]
 
 0.886
GAK47140.1
Hypothetical protein; Gene_238; identified by MetaGeneAnnotator; putative.
 
 
 
 0.881
GAK47139.1
COG0642 Signal transduction histidine kinase; gene_237; identified by MetaGeneAnnotator; putative; sensor histidine kinase [Lactobacillus animalis KCTC 3501].
 
 
 
 0.870
GAK47141.1
DNA binding response regulator [Enterococcus gallinarum EG2]; DNA binding site [nucleotide binding]; Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and..; cd00383; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; COG0745; Signal receiver domain; originally thought to be unique to bacter [...]
 
     0.849
GAK47339.1
S4 domain protein; KEGG: hiq:CGSHiGG_06085 8.4e-06 glucose-6-phosphate 1-dehydrogenase K04762; RNA binding surface [nucleotide binding]; S4 domain protein [Lactobacillus parafarraginis F0439]; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized..; cd00165; gene_437; identified by MetaGeneAnnotator; putative.
  
    0.565
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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