STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47257.1Hypothetical protein; Gene_355; identified by MetaGeneAnnotator; putative. (119 aa)    
Predicted Functional Partners:
GAK47255.1
LPXTG-motif cell wall anchor domain protein; Gene_353; identified by MetaGeneAnnotator; putative.
       0.553
GAK47256.1
Extracellular protein, LPXTG-motif cell wall anchor [Lactobacillus pentosus KCA1]; gene_354; identified by MetaGeneAnnotator; putative.
       0.553
GAK48276.1
Hypothetical protein; Gene_1374; identified by MetaGeneAnnotator; putative.
 
     0.477
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.