STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47461.1Hypothetical protein zj316_1972 [Lactobacillus plantarum ZJ316]; gene_559; identified by MetaGeneAnnotator; putative. (95 aa)    
Predicted Functional Partners:
GAK47628.1
Branched-chain amino acid transport protein (AzlD); pfam05437; PFAM: Branched-chain amino acid transport, AzlD; KEGG: lbr:LVIS_2048 hypothetical protein; branched-chain amino acid transport [Lactobacillus buchneri NRRL B- 30929]; gene_726; identified by MetaGeneAnnotator; putative.
  
     0.767
GAK47627.1
AzlC protein; pfam03591; branched-chain amino acid permease (azaleucine resistance) [Lactobacillus brevis ATCC 367]; gene_725; identified by MetaGeneAnnotator; putative.
  
     0.760
GAK47970.1
Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; cd00093; XRE family transcriptional regulator [Lactobacillus brevis ATCC 367]; gene_1068; identified by MetaGeneAnnotator; putative; non-specific DNA binding site [nucleotide binding]; salt bridge; sequence-specific DNA binding site [nucleotide binding].
  
     0.741
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.713
rsmE
16S rRNA methyltransferase RsmE; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.708
GAK47388.1
Hypothetical protein; Gene_486; identified by MetaGeneAnnotator; putative.
  
     0.693
GAK47969.1
SAM-dependent methyltransferase [Lactobacillus brevis ATCC 367]; gene_1067; identified by MetaGeneAnnotator; putative.
  
     0.661
GAK47868.1
Hypothetical protein; Gene_966; identified by MetaGeneAnnotator; putative; pore-forming protein, partial [Lactobacillus hilgardii ATCC 8290].
  
     0.658
GAK47457.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.629
GAK48195.1
Hypothetical protein; Gene_1293; identified by MetaGeneAnnotator; putative.
  
     0.626
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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