STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citG2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [Lactobacillus pentosus KCA1]; ATP:dephospho-CoA triphosphoribosyl transferase; cl00768; gene_669; identified by MetaGeneAnnotator; putative. (290 aa)    
Predicted Functional Partners:
citX
phosphoribosyl-dephospho-CoA transferase; Gene_668; identified by MetaGeneAnnotator; putative.
 
 0.999
citC
[citrate (pro-3S)-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
  
 0.992
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.954
citE
Citrate lyase, beta chain [Lactobacillus pentosus KCA1]; Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low..; cl09155; gene_666; identified by MetaGeneAnnotator; putative; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.941
citF
Citrate lyase, alpha chain [Lactobacillus pentosus KCA1]; citrate lyase, alpha subunit; TIGR01584; gene_667; identified by MetaGeneAnnotator; putative.
 
  
 0.924
GAK47563.1
Putative hydrolase; Gene_661; identified by MetaGeneAnnotator; putative.
 
     0.504
citR
Citrate lyase regulator, SorC family; Putative sugar-binding domain; pfam04198; Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]; COG2390; citrate lyase regulator, SorC family [Lactobacillus plantarum WCFS1]; gene_662; identified by MetaGeneAnnotator; putative.
 
     0.438
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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