STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47579.1Nisin resistance protein; Active site serine [active]; C-terminal processing peptidase family S41; cd06567; Nisin resistance protein [Tetragenococcus halophilus HO]; gene_677; identified by MetaGeneAnnotator; putative. (320 aa)    
Predicted Functional Partners:
GAK47709.1
Hypothetical protein; Gene_807; identified by MetaGeneAnnotator; putative.
  
   0.792
GAK48681.1
Pilus protein; Pfam: PF00092; InterPro: IPR002035; Repeat unit of collagen-binding protein domain B; cd00222; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of..; cd00198; domain interaction interfaces [polypeptide binding]; gene_1779; identified by MetaGeneAnnotator; putative; metal ion-dependent adhesion site (MIDAS); yvcC protein [Lactobacillus paracasei subsp. paracasei ATCC 25302].
  
   0.792
pheT
phenylalanyl-tRNA synthetase beta subunit; B3/4 domain; pfam03483; Ferredoxin-fold anticodon binding domain; pfam03147; Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an..; cd00769; catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of al [...]
   
 
 0.676
GAK48324.1
Domain of unknown function (DUF3358); pfam11838; Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ); cd09601; Peptidase family M1; pfam01433; Zn binding site [ion binding]; aminopeptidase N [Lactobacillus rhamnosus GG]; gene_1422; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103.
    
 0.552
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
   
   0.532
GAK48037.1
Phosphoesterase; DHH family; pfam01368; DHHA1 domain protein [Lactobacillus kisonensis F0435]; DHHA1 domain; pfam02272; Exopolyphosphatase-related proteins [General function prediction only]; KEGG: gct:GC56T3_0746 7.0e-73 3'(2'),5'-bisphosphate nucleotidase K06881; Psort location: Cytoplasmic, score: 8.96; gene_1135; identified by MetaGeneAnnotator; putative.
   
   0.510
GAK48401.1
Trypsin-like serine protease with PDZ domain; Gene_1499; identified by MetaGeneAnnotator; putative.
    
 0.487
GAK48521.1
PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind..; cd00987; Trypsin-like peptidase domain; pfam13365; gene_1619; identified by MetaGeneAnnotator; putative; protein binding site [polypeptide binding]; trypsin-like serine protease [Lactobacillus brevis ATCC 367].
    
 0.487
GAK47147.1
Oligo-1,6-glucosidase; Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins; cd11333; COG: COG0366; Pfam: PF00128; InterPro: IPR013781; Ca binding site [ion binding]; Domain of unknown function (DUF3459); pfam11941; alpha,alpha-phosphotrehalase; TIGR02403; catalytic site [active]; gene_245; identified by MetaGeneAnnotator; putative; oligo-1,6-glucosidase [Lactobacillus brevis subsp. gravesensis ATCC 27305].
    
 0.481
GAK47975.1
Gamma-glutamyltransferase [Amino acid transport and metabolism]; COG0405; Gamma-glutamyltranspeptidase [Oenococcus kitaharae DSM 17330]; Gamma-glutamyltranspeptidase; pfam01019; gene_1073; identified by MetaGeneAnnotator; putative.
    
  0.445
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.