STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47597.1Possible surface layer protein SlpB; Fragment; gene_695; identified by MetaGeneAnnotator; putative. (127 aa)    
Predicted Functional Partners:
GAK47596.1
Possible surface layer protein SlpB; Fragment; gene_694; identified by MetaGeneAnnotator; putative; possible surface layer protein SlpB [Lactobacillus brevis subsp. gravesensis ATCC 27305].
       0.642
GAK47594.1
Gluconate:proton symporter; D-glycerate transporter (predicted) [Oenococcus kitaharae DSM 17330]; H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]; COG2610; Na+-H+ antiporter family; cl15264; gene_692; identified by MetaGeneAnnotator; putative.
       0.421
GAK47595.1
Gene_693; glycerate kinase; glycerate kinase [Lactobacillus brevis ATCC 367]; identified by MetaGeneAnnotator; putative; Belongs to the glycerate kinase type-1 family.
       0.421
GAK47598.1
Hypothetical protein; Gene_696; identified by MetaGeneAnnotator; putative.
       0.417
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.