STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47603.1ribosomal-protein-L7p-serine acetyltransferase; Gene_701; identified by MetaGeneAnnotator; putative. (137 aa)    
Predicted Functional Partners:
GAK47604.1
Hypothetical protein; Gene_702; identified by MetaGeneAnnotator; putative.
  
    0.487
GAK48165.1
Putative membrane protein; Gene_1263; identified by MetaGeneAnnotator; putative.
   
   0.479
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.453
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.445
GAK48092.1
Acetyltransferase; Gene_1190; identified by MetaGeneAnnotator; putative.
  
     0.428
GAK48163.1
DeoR family transcriptional regulator; Gene_1261; identified by MetaGeneAnnotator; putative.
    
   0.420
GAK48352.1
Galactoside O-acetyltransferase; COG0110 Acetyltransferase (isoleucine patch superfamily); CoA binding site [chemical binding]; Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6..; cd03357; galactoside O-acetyltransferase [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_1450; identified by MetaGeneAnnotator; putative; maltose O-acetyltransferase; Provisional; substrate binding [...]
    
 0.419
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
  0.415
GAK48250.1
Arginase; Gene_1348; identified by MetaGeneAnnotator; putative; Belongs to the arginase family.
     
 0.400
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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