STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47643.1Thioredoxin; KEGG: bay:RBAM_025560 5.9e-21 trxA; hypothetical protein K03671; Psort location: Cytoplasmic, score: 9.26; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox..; cd02947; catalytic residues [active]; gene_741; identified by MetaGeneAnnotator; putative; thioredoxin [Lactobacillus parafarraginis F0439]. (105 aa)    
Predicted Functional Partners:
GAK48407.1
Thioredoxin reductase; NAD(P)-binding Rossmann-like domain; pfam13450; Pyridine nucleotide-disulphide oxidoreductase; pfam00070; gene_1505; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; thioredoxin reductase [Lactobacillus rhamnosus GG]; thioredoxin-disulfide reductase; TIGR01292.
 0.996
GAK48132.1
ferredoxin-NADP(+) reductase; Gene_1230; identified by MetaGeneAnnotator; putative.
  
 0.878
GAK47642.1
TerC family membrane protein; COG: COG0861; Pfam: PF03741; InterPro: IPR005496; TerC family membrane protein [Lactobacillus brevis subsp. gravesensis ATCC 27305]; gene_740; identified by MetaGeneAnnotator; putative; integral membrane protein, YkoY family; TIGR03716.
       0.855
arsC
Arsenate reductase; COG: COG0394; Low molecular weight phosphatase family; cd00115; Low molecular weight phosphotyrosine protein phosphatase; pfam01451; arsenate reductase [Lactobacillus reuteri SD2112]; gene_393; identified by MetaGeneAnnotator; putative.
  
 
 0.805
gap-3
Glyceraldehyde-3-phosphate dehydrogenase; COG: COG0057; Pfam: PF00044,PF02800; InterPro: IPR000173; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; pfam02800; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; smart00846; gene_1604; glyceraldehyde-3-phosphate dehydrogenase [Lactobacillus brevis subsp. gravesensis ATCC 27305]; glyceraldehyde-3-phosphate dehydrogenase, type I; TIGR01534; identified by MetaGeneAnnotator; putative.
  
 
 0.705
groEL
Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
 
 0.674
yfkJ
Possible protein-tyrosine phosphatase; COG: COG0394; Low molecular weight phosphatase family; cd00115; Low molecular weight phosphotyrosine protein phosphatase; pfam01451; gene_456; identified by MetaGeneAnnotator; putative; possible tyrosine-phosphatase protein [Lactobacillus vaginalis ATCC 49540].
  
 
 0.672
GAK47641.1
N-acetylmuramidase; Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]; COG1705; N-acetylmuramidase [Lactobacillus brevis ATCC 367]; gene_739; identified by MetaGeneAnnotator; putative.
       0.615
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
 
 0.568
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
   0.552
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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