STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47658.12',3'-cyclic-nucleotide 2'-phosphodiesterase; Gene_756; identified by MetaGeneAnnotator; putative; Belongs to the 5'-nucleotidase family. (517 aa)    
Predicted Functional Partners:
deoD
Purine nucleoside phosphorylase; Uridine phosphorylase [Nucleotide transport and metabolism]; COG2820; catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; gene_1551; identified by MetaGeneAnnotator; putative; purine nucleoside phosphorylase [Lactobacillus brevis ATCC 367]; purine nucleoside phosphorylase; Reviewed; PRK05819.
    
  0.864
GAK47301.1
Inosine-uridine nucleoside N-ribohydrolase; Dimerization interface [polypeptide binding]; gene_399; identified by MetaGeneAnnotator; putative; inosine-uridine nucleoside N-ribohydrolase [Lactobacillus brevis ATCC 367]; nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base; cd02647.
  
 
  0.749
GAK48130.1
Inosine-uridine nucleoside N-ribohydrolase; NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These..; cd02650; gene_1228; identified by MetaGeneAnnotator; putative; inosine-uridine nucleoside N-ribohydrolase [Lactobacillus brevis ATCC 367].
  
 
  0.749
GAK48455.1
Pyrimidine-nucleoside phosphorylase; Glycosyl transferase family, a/b domain; pfam00591; Glycosyl transferase family, helical bundle domain; pfam02885; Pyrimidine nucleoside phosphorylase C-terminal domain; pfam07831; gene_1553; identified by MetaGeneAnnotator; putative; pyrimidine-nucleoside phosphorylase; Reviewed; thymidine phosphorylase [Lactobacillus brevis ATCC 367].
    
  0.749
udk
Uridine kinase; ATP-binding site [chemical binding]; KEGG: lbr:LVIS_1007 8.9e-89 uridine kinase K00876; Psort location: Cytoplasmic, score: 9.97; Pyrimidine base specificity; Sugar specificity; Uridine kinase [Nucleotide transport and metabolism]; COG0572; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway; cd02023; gene_64; identified by MetaGeneAnnotator; putative; uridine kinase [La [...]
  
 
  0.748
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
    
 0.747
GAK48325.1
NADH pyrophosphatase; Gene_1423; identified by MetaGeneAnnotator; putative.
    
  0.692
GAK47859.1
COG1546 Uncharacterized protein (competence- and mitomycin-induced); CinA domain containing; Competence-damaged protein; pfam02464; competence damage-inducible protein A [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_957; identified by MetaGeneAnnotator; putative; Belongs to the CinA family.
  
 
  0.686
GAK47912.1
CinA domain-containing protein [Lactobacillus buchneri NRRL B- 30929]; Competence-damaged protein; pfam02464; KEGG: lps:LPST_C1906 competence/damage-inducible protein CinA; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; gene_1010; identified by MetaGeneAnnotator; putative; Belongs to the CinA family.
  
 
  0.686
GAK47659.1
Hypothetical protein; Gene_757; identified by MetaGeneAnnotator; putative.
       0.596
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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