STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuA-2ABC-type proline/glycine betaine transport systems, ATPase components; ABC transporter signature motif; ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; COG1126; ATP binding site [chemical binding]; ATP-binding cassette domain of the osmoprotectant transporter; cd03295; D-loop; H-loop/switch region; Q-loop/lid; Walker A/P-loop; Walker B; gene_904; glycine betaine transport ATP-binding protein opuAA [Aggregatibacter actinomycetemcomitans D7S- 1]; identified by MetaGeneAnnotator; putative. (323 aa)    
Predicted Functional Partners:
opuC
ABC-type proline/glycine betaine transport systems, permease component; ABC-ATPase subunit interface; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; COG1732; Substrate binding domain of ABC-type glycine betaine transport system; pfam04069; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC [...]
 0.999
OpuBD
ABC-ATPase subunit interface; COG1174 ABC-type proline/glycine betaine transport systems, permease component; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; conserved gate region; dimer interface [polypeptide binding]; gene_27; glycine betaine/carnitine/choline ABC transporter, ATP-binding protein [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; identified by [...]
 0.994
OpuC
Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]; COG1732; Substrate binding domain of ABC-type glycine betaine transport system; pfam04069; gene_28; identified by MetaGeneAnnotator; putative; periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Lactobacillus brevis ATCC 367].
 0.994
OpuBD-2
ABC-type proline/glycine betaine transport systems, permease component; ABC-ATPase subunit interface; Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB [Lactobacillus pentosus KCA1]; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; conserved gate region; dimer interface [polypeptide binding]; gene_29; identified by MetaGeneAnnotator; putativ [...]
 0.994
opuA
ABC-type proline/glycine betaine transport systems, ATPase components; ABC transporter signature motif; ATP binding site [chemical binding]; ATP-binding cassette domain of the osmoprotectant transporter; cd03295; D-loop; H-loop/switch region; Q-loop/lid; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing..; cd04583; Walker A/P-loop; Walker B; gene_30; glycine betaine/L-proline transport [...]
  
  
 
0.952
GAK48255.1
ABC transporter [Pediococcus claussenii ATCC BAA-344]; ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ATP binding site [chemical binding]; D-loop; H-loop/switch region; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic..; cd03251; Q-loop/lid; Walker A/P-loop; Walker B; gene_1353; identified by MetaGeneAnnotator; putative; lipid A export permease/ATP-bin [...]
 
    
0.906
lmrA
ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; D-loop; H-loop/switch region; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Q-loop/lid; Walker A/P-loop; Walker B; gene_222; identified by MetaGeneAnnotator; putative; multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits [Lactobacillus sakei subsp. sakei 23K].
 
    
0.905
GAK48206.1
ABC-type multidrug transport system, ATPase and permease components; ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC transporter, ATP-binding protein [Lactobacillus kisonensis F0435]; ATP binding site [chemical binding]; D-loop; H-loop/switch region; KEGG: ljf:FI9785_761 9.5e-172 ABC transporter ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Q-loop/lid; Walker A/P-loop; Walker B; gene_1304; identified by MetaGeneAnnotator; putative; putative multidrug [...]
 
    
0.904
oppC
ABC-ATPase subunit interface; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]; COG1173; N-terminal TM domain of oligopeptide transport permease C; pfam12911; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; conserved gate region; dimer interface [polypeptide binding [...]
 
      0.890
GAK48252.1
ABC transporter; Gene_1350; identified by MetaGeneAnnotator; putative.
 
    
0.862
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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