STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47854.1Putative membrane protein; Gene_952; identified by MetaGeneAnnotator; putative. (121 aa)    
Predicted Functional Partners:
GAK47853.1
prolyl-tRNA synthetase; Gene_951; identified by MetaGeneAnnotator; putative.
       0.773
GAK47852.1
COG: COG4892; Cytochrome b5-like Heme/Steroid binding domain; cl02041; cytochrome b5 protein [Lactobacillus salivarius ATCC 11741]; gene_950; identified by MetaGeneAnnotator; putative.
       0.636
GAK47855.1
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.515
GAK47856.1
ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; COG4166; ABC-type oligopeptide transport system, periplasmic component [Lactobacillus brevis ATCC 367]; The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold; cd08504; gene_954; identified by MetaGeneAnnotator; putative; peptide binding site [polypeptide binding].
       0.515
GAK48099.1
Hypothetical protein; Gene_1197; identified by MetaGeneAnnotator; putative.
  
     0.430
GAK47978.1
NhaP-type Na+/H+ and K+/H+ antiporter; Gene_1076; identified by MetaGeneAnnotator; putative.
 
     0.403
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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