STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47906.1LytTR family transcriptional regulator; COG: COG1917; Pfam: PF07883; Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]; cupin domain protein [Lactobacillus plantarum subsp. plantarum ATCC 14917]; gene_1004; identified by MetaGeneAnnotator; putative. (139 aa)    
Predicted Functional Partners:
GAK47905.1
4-carboxymuconolactone decarboxylase; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]; gamma-carboxymuconolactone decarboxylase subunit-like protein [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_1003; identified by MetaGeneAnnotator; putative.
  
 0.993
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.609
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
    
  0.600
GAK47904.1
Aldehyde dehydrogenase family; pfam00171; Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like; cd07100; NAD(P) binding site [chemical binding]; Succinate-semialdehyde dehydrogenase [Oenococcus kitaharae DSM 17330]; catalytic residues [active]; gene_1002; identified by MetaGeneAnnotator; putative.
  
  
 0.599
GAK47054.1
Prephenate dehydratase; Gene_152; identified by MetaGeneAnnotator; putative.
  
 
 0.554
purB
Adenylosuccinate lyase [Lactobacillus pentosus KCA1]; Adenylsuccinate lyase (ASL)_subgroup 1; cd01360; adenylosuccinate lyase; Provisional; gene_387; identified by MetaGeneAnnotator; putative; tetramer interface [polypeptide binding].
   
 0.553
GAK47907.1
Recombinase RarA; ATP binding site [chemical binding]; MgsA AAA+ ATPase C terminal; pfam12002; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; cd00009; Walker A motif; Walker B motif; arginine finger; gene_1005; identified by MetaGeneAnnotator; putative; recombination factor protein RarA [Lactobacillus rhamnosus GG]; recombination factor protein RarA; Reviewed; strain coidentity: A [...]
       0.520
guaA
GMP synthetase; Catalyzes the synthesis of GMP from XMP.
     
 0.473
GAK48600.1
General stress protein; Gene_1698; identified by MetaGeneAnnotator; putative.
    
 0.473
GAK47960.1
GntR family transcriptional regulator; DNA-binding site [nucleotide binding]; The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain; smart00866; Transcriptional regulators [Transcription]; COG2188; Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; cd07377; gene_1058; identified by MetaGeneAnnotator; putative; transcriptional regulator [Lactobacillus brevis ATCC 367].
  
    0.459
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.