STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK47949.1Putative membrane protein; Gene_1047; identified by MetaGeneAnnotator; putative. (76 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.852
GAK47947.1
Mg binding site [ion binding]; MreB and similar proteins; cd10225; RodZ interaction site [polypeptide binding]; gene_1045; identified by MetaGeneAnnotator; putative; nucleotide binding site [chemical binding]; putative protofilament interaction site [polypeptide binding]; rod shape-determining protein MreB [Lactobacillus brevis ATCC 367]; rod shape-determining protein MreB; Provisional.
       0.687
atpC
F0F1-type ATP synthase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.659
atpD
F0F1-type ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
       0.652
atpG
F0F1-type ATP synthase gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
       0.632
atpA
F0F1-type ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
       0.596
GAK46958.1
Bacterial protein of unknown function (DUF910); pfam06014; Hypothetical protein zj316_1570 [Lactobacillus plantarum ZJ316]; gene_56; identified by MetaGeneAnnotator; putative.
  
     0.588
atpH
F0F1-type ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
       0.557
atpF
F0F1-type ATP synthase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
       0.555
GAK47190.1
YggT family protein; Psort location: CytoplasmicMembrane, score: 9.82; YGGT family protein [Lactobacillus parafarraginis F0439]; YGGT family; pfam02325; gene_288; identified by MetaGeneAnnotator; putative.
  
     0.516
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.