STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmD50S ribosomal protein L30; 23S rRNA binding site [nucleotide binding]; 50S ribosomal protein L30 [Lactobacillus rhamnosus GG]; Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that..; cd01658; gene_1154; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103. (60 aa)    
Predicted Functional Partners:
rpmB
50S ribosomal protein L28 [Lactobacillus rhamnosus GG]; 50S ribosomal protein L28; Reviewed; PRK00359; gene_14; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.999
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
 
 0.999
rpmA
50S ribosomal protein L27; Validated; PRK05435; KEGG: apb:SAR116_1855 6.1e-19 ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; gene_42; identified by MetaGeneAnnotator; putative; ribosomal protein L27 [Lactobacillus parafarraginis F0439]; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.999
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.999
rpmG
50S ribosomal protein L33 [Bacillus licheniformis DSM 13 = ATCC 14580]; 50S ribosomal protein L33; Validated; PRK00595; gene_59; identified by MetaGeneAnnotator; putative; in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif.
  
 
 0.999
rpmF
50S ribosomal protein L32 [Bacillus licheniformis DSM 13 = ATCC 14580]; 50S ribosomal protein L32; Reviewed; PRK12286; gene_81; identified by MetaGeneAnnotator; putative; some L32 proteins have zinc finger motifs consisting of CXXC while others do not.
   
 
 0.999
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.999
rpmI
50S ribosomal protein L35 [Lactobacillus brevis ATCC 367]; 50S ribosomal protein L35; Reviewed; PRK00172; gene_92; identified by MetaGeneAnnotator; putative; Belongs to the bacterial ribosomal protein bL35 family.
   
 
 0.999
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.999
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.999
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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