STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK48225.1Hypothetical protein; Gene_1323; identified by MetaGeneAnnotator; putative. (204 aa)    
Predicted Functional Partners:
GAK48224.1
Hypothetical protein; Gene_1322; identified by MetaGeneAnnotator; putative.
     
 0.836
GAK48226.1
Conjugal transfer protein; Conjugation protein [Lactobacillus paracasei subsp. paracasei 8700:2]; gene_1324; identified by MetaGeneAnnotator; putative.
       0.832
trsC
Conjugation protein TrsC [Pediococcus claussenii ATCC BAA- 344]; gene_1325; identified by MetaGeneAnnotator; putative.
       0.582
GAK48228.1
TrsD (TraD) family conjugation protein [Oenococcus kitaharae DSM 17330]; gene_1326; identified by MetaGeneAnnotator; putative; type IV secretion/conjugal transfer ATPase, VirB4 family; TIGR00929.
       0.582
GAK48229.1
TrsE (TraE) family conjugation protein; AAA-like domain; pfam12846; CagE, TrbE, VirB family, component of type IV transporter system; pfam03135; G1 box; GTP/Mg2+ binding site [chemical binding]; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Switch I region; TrsE (TraE) family conjugation protein [Oenococcus kitaharae DSM 17330]; gene_1327; identified by MetaGeneAnnotator; putative.
       0.578
GAK48223.1
Nicking enzyme TraA protein; MobA/MobL family; pfam03389; gene_1321; identified by MetaGeneAnnotator; putative; plasmid mobilization protein, mobA/MobL family [Pediococcus claussenii ATCC BAA- 344].
       0.523
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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