STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK48254.1FAD(NAD)-dependent oxidoreductase; Gene_1352; identified by MetaGeneAnnotator; putative. (616 aa)    
Predicted Functional Partners:
GAK47861.1
NADP oxidoreductase coenzyme F420-dependent; pfam03807; Predicted dinucleotide-binding enzymes [General function prediction only]; dinucleotide-binding protein [Pediococcus pentosaceus ATCC 25745]; gene_959; identified by MetaGeneAnnotator; putative.
 
     0.791
GAK48255.1
ABC transporter [Pediococcus claussenii ATCC BAA-344]; ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ATP binding site [chemical binding]; D-loop; H-loop/switch region; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic..; cd03251; Q-loop/lid; Walker A/P-loop; Walker B; gene_1353; identified by MetaGeneAnnotator; putative; lipid A export permease/ATP-bin [...]
 
     0.655
GAK47966.1
Hypothetical protein; Gene_1064; identified by MetaGeneAnnotator; putative.
  
     0.526
GAK48256.1
Hypothetical protein; Gene_1354; identified by MetaGeneAnnotator; putative.
       0.511
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.482
GAK47131.1
Putative nucleoside-sugar epimerase; Gene_229; identified by MetaGeneAnnotator; putative.
  
     0.419
GAK48623.1
Hypothetical protein; Gene_1721; identified by MetaGeneAnnotator; putative.
  
     0.413
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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