STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
def-2Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (136 aa)    
Predicted Functional Partners:
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
 
 0.840
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.836
rpsU
30S ribosomal protein S21 [Lactobacillus rhamnosus GG]; 30S ribosomal protein S21; Reviewed; PRK00270; gene_543; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.833
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.817
rpsP
30S ribosomal protein S16 [Lactobacillus rhamnosus GG]; 30S ribosomal protein S16; Reviewed; PRK00040; gene_996; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; Belongs to the bacterial ribosomal protein bS16 family.
  
   0.815
rpmB
50S ribosomal protein L28 [Lactobacillus rhamnosus GG]; 50S ribosomal protein L28; Reviewed; PRK00359; gene_14; identified by MetaGeneAnnotator; putative; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.814
rpmA
50S ribosomal protein L27; Validated; PRK05435; KEGG: apb:SAR116_1855 6.1e-19 ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; gene_42; identified by MetaGeneAnnotator; putative; ribosomal protein L27 [Lactobacillus parafarraginis F0439]; Belongs to the bacterial ribosomal protein bL27 family.
  
   0.812
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.811
rpsB
30S ribosomal protein S2 [Lactobacillus rhamnosus GG]; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of..; cd01425; S8 interaction site; gene_1297; identified by MetaGeneAnnotator; putative; putative laminin-1 binding site; rRNA interaction site [nucleotide binding]; strain coidentity: ATCC 53103 = GG; synonym: Lactobacillus rhamnosus ATCC 53103.
  
   0.809
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.809
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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