STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK48364.1Acetyltransferase; Gene_1462; identified by MetaGeneAnnotator; putative. (152 aa)    
Predicted Functional Partners:
GAK48365.1
OsmC family protein; Gene_1463; identified by MetaGeneAnnotator; putative.
       0.530
cspA-2
Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein; cd04458; DNA-binding site [nucleotide binding]; KEGG: lbr:LVIS_1942 cold shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; RNA-binding motif; cold-shock DNA-binding domain-containing protein [Lactobacillus buchneri NRRL B- 30929]; gene_1461; identified by MetaGeneAnnotator; putative.
       0.476
GAK48135.1
Acetyltransferase; Gene_1233; identified by MetaGeneAnnotator; putative.
  
     0.462
GAK48421.1
N-acetylmuramoyl-L-alanine amidase; Gene_1519; identified by MetaGeneAnnotator; putative.
 
    0.436
nagE
PTS family N-acetylglucosamine porter, IIABC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974; HPr interaction site; PTS family N-acetylglucosamine porter, IIABC component [Lactobacillus plantarum subsp. plantarum ATCC 14917]; PTS system, N-acetylglucosamine-specific IIBC component; TIGR01998; PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family..; cd00212; Phos [...]
       0.400
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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