STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK48390.1Transposase; Helix-turn-helix domain; pfam13518; Transposase and inactivated derivatives [DNA replication, recombination, and repair]; gene_1488; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; transposase [Lactobacillus buchneri NRRL B- 30929]. (178 aa)    
Predicted Functional Partners:
GAK48776.1
Transposase; Integrase core domain; pfam13683; gene_1874; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; transposase [Lactobacillus buchneri NRRL B- 30929].
 
    0.796
GAK48788.1
Transposase; Integrase core domain; pfam00665; gene_1886; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; putative transposase OrfB; Reviewed; transposase [Lactobacillus buchneri NRRL B- 30929].
 
    0.796
GAK48391.1
Transposase; HTH-like domain; pfam13276; fragment; gene_1489; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; putative transposase OrfB; Reviewed; transposase [Lactobacillus buchneri NRRL B- 30929].
  
    0.784
GAK48784.1
Transposase; HTH-like domain; pfam13276; gene_1882; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; putative transposase OrfB; Reviewed; transposase [Lactobacillus buchneri NRRL B- 30929].
 
    0.784
GAK48746.1
Transposase; Integrase core domain; pfam13683; gene_1844; identified by MetaGeneAnnotator; putative; manually curated; KEGG: lfe:LAF_1723 hypothetical protein; transposase [Lactobacillus buchneri NRRL B- 30929].
 
    0.760
GAK48389.1
Amino acid permease; pfam13520; amino acid transporter [Lactobacillus brevis ATCC 367]; gene_1487; identified by MetaGeneAnnotator; putative.
       0.613
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.