STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK48526.1Transposase; Psort location: Cytoplasmic, score: 7.50; Transposase DDE domain; pfam01609; gene_1624; identified by MetaGeneAnnotator; putative; transposase, IS4 family, partial [Lactobacillus rhamnosus ATCC 21052]. (250 aa)    
Predicted Functional Partners:
GAK47811.1
ATP-binding protein; Domain of unknown function (DUF814); pfam05670; Fibronectin-binding protein A N-terminus (FbpA); pfam05833; fibronectin-binding protein [Lactobacillus brevis ATCC 367]; gene_909; identified by MetaGeneAnnotator; putative.
  
  
 0.766
GAK48525.1
Thymidine kinase; ATP binding site [chemical binding]; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Uncharacterized conserved protein (DUF2075); pfam09848; Uncharacterized conserved protein [Function unknown]; Walker A motif; Walker B motif; gene_1623; identified by MetaGeneAnnotator; putative; thymidine kinase [Lactobacillus brevis ATCC 367].
       0.462
GAK48195.1
Hypothetical protein; Gene_1293; identified by MetaGeneAnnotator; putative.
  
     0.415
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.400
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.