STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RT41_GL000578Unannotated protein; Belongs to the Nudix hydrolase family. (148 aa)    
Predicted Functional Partners:
RT41_GL000919
Unannotated protein.
  
 
 0.899
RT41_GL000436
Unannotated protein.
   
  0.863
RT41_GL001827
Unannotated protein.
    
 0.862
cshB
Unannotated protein; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures.
   
 0.834
cshA
Unannotated protein; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
   
 0.834
GCA_001311235_00789
Unannotated protein.
   
 0.834
GCA_001311235_02944
Unannotated protein.
  
    0.783
uvrB
Unannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the [...]
  
    0.783
RT41_GL001356
Unannotated protein; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
 
 
 0.699
GCA_001311235_02491
Unannotated protein.
  
 
 0.687
Your Current Organism:
Lactococcus fujiensis
NCBI taxonomy Id: 1291764
Other names: L. fujiensis JCM 16395, Lactococcus fujiensis DSM 27937, Lactococcus fujiensis JCM 16395, Lactococcus fujiensis NJ 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.