Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIR12596.1PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)    
Predicted Functional Partners:
allB_1
Allantoinase; Plays a crucial role on both purine and pyrimidine metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.909
ybbW_1
Allantoin permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.878
KIR12584.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.788
KIR12585.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
fdrA
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.770
KIR12591.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
ylbA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
KIR12904.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.627
allC_2
Allantoate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.605
allD_3
Catalyzes the formation of oxalurate from ureidoglycolate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH2/MDH2 oxidoreductase family.
 
     0.517
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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