Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIR12845.1TspO/MBR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)    
Predicted Functional Partners:
crtP
Diapolycopene oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
KIR12846.1
Glycosyl-4,4'-diaponeurosporenoate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.863
KIR12844.1
NmrA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.786
crtQ_2
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.757
crtN_2
Dehydrosqualene desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.746
KIR12852.1
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.661
crtM_2
Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.577
atpH_2
ATP synthase F0F1 subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.490
atpA_4
ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.483
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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