Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
crtQ_2Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
crtP
Diapolycopene oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.995
KIR12846.1
Glycosyl-4,4'-diaponeurosporenoate acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
crtN_2
Dehydrosqualene desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.937
crtM_2
Squalene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.832
KIR12845.1
TspO/MBR family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.757
KIR12844.1
NmrA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.660
crtM_4
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.610
KIR10176.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.555
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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