Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIR12383.1Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
ycjS_2
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.967
KIR12380.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.934
KIR12381.1
PalA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
xylB_1
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.562
xylB_2
Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.560
yvaA_2
Quinolinate phosphoribosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.535
iolG_2
Inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.474
iolB_3
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.467
ycjS_3
Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.464
KIR11894.1
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.432
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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