STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yigZABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)    
Predicted Functional Partners:
KIR12524.1
DegV family EDD domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.697
KIR12527.1
Sigma-54 modulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.557
KIR11766.1
tRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.541
KIR12526.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
KIR11235.1
Magnesium transporter CorA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.529
recA_2
Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.490
KIR12525.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.481
ribD_2
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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