Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIR11369.1Uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
yqfA
Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.838
ydjM
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.717
KIR12186.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
KIR11367.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
KIR11654.1
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
 
 0.462
pgcA_2
Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.459
acuC
Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.450
KIR12871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.446
norB_9
Quinolone resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.446
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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