Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
odhOctopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (356 aa)    
Predicted Functional Partners:
mleN_1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
KIR11469.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.696
KIR11455.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.677
engA
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.665
KIR12547.1
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.603
KIR11087.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.593
yecD
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.593
lgt_2
Diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
  
    0.551
rluD_4
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.436
KIR11470.1
Secretory antigen precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.405
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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