Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytD_2Autolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
lyrA
Lysostaphin resistance protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.822
KIR11476.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.815
nahG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.702
KIR11477.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
KIR11478.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
mreD
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.576
KIR10400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
KIR11115.1
CAAX protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.564
KIR12197.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
KIR10112.1
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.480
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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