Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vraR_4LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)    
Predicted Functional Partners:
vraS_3
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
desK
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.949
vraS_1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.948
KIR11335.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.945
nreB_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.880
KIR11336.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.843
map_2
Methionine aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.711
KIR11338.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
graS
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.578
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
      
 0.540
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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