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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytmI_3Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)    
Predicted Functional Partners:
ywnA
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.471
cysG_2
uroporphyrin-III methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the precorrin methyltransferase family.
  
    0.471
nirR_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
sirA
Preprotein translocase subunit TatB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
nasD_2
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
nasE
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
qoxD
Quinol oxidase subunit 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
sinR
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.431
KIR12191.1
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.431
KIR10239.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.431
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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