Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lolD_2Hemin ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)    
Predicted Functional Partners:
KIR11263.1
Hemin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
hssS_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.892
hssR_2
Heme transporter CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.872
KIR12918.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.871
KIR12917.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.801
KIR10091.1
Bacitracin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.796
KIR11898.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
cysS_2
cysteinyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
trxB
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.616
rpsE
30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.613
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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