STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIR11086.1Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)    
Predicted Functional Partners:
tcaA_3
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KIR12066.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
KIR12065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
KIR11430.1
Malonate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
KIR11087.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.728
yccS
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
agrB
Accessory gene regulator AgrB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
rot
Repressor; Global regulator with both positive and negative effects that mediates modulation of several genes involved in virulence.
  
     0.704
KIR10268.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.677
ppaC_2
Inorganic pyrophosphatase; Catalyzes the hydrolysis of pyrophosphate to phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.