Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xerC_3Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (687 aa)    
Predicted Functional Partners:
tnpC
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.948
xerC_4
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.948
KIR11095.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
hslV_1
ATP-dependent protease subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
  
 0.633
KIR12526.1
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.535
tyrC
Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
whiA
Sporulation regulator WhiA; Involved in cell division and chromosome segregation.
   
    0.512
hslU_2
ATP-dependent protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.472
rpsI
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family.
    
 
 0.453
rpsU
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.424
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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