Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
yobO_3Peptidase G2; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)    
Predicted Functional Partners:
KIR10681.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.807
KIR10684.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.741
KIR10682.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
KIR10685.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.707
KIR10679.1
Bacteriophage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
KIR10680.1
Holin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
KIR10678.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.671
KIR10669.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.645
KIR10676.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.621
KIR10671.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.606
Your Current Organism:
Staphylococcus gallinarum
NCBI taxonomy Id: 1293
Other names: ATCC 35539, CCM 3572, CCUG 15600, CIP 103504, DSM 20610, LMG 19121, LMG:19121, NCTC 12195, NRRL B-14763, S. gallinarum, strain VIII1
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