STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAES_164431E3 ubiquitin-protein ligase TRIM13. (409 aa)    
Predicted Functional Partners:
AAES_145039
Ubiquitin-40S ribosomal protein S27a.
    
  0.688
AAES_52836
AN1-type zinc finger protein 4.
    
 0.601
AAES_54471
Inducible T-cell costimulator.
    
 0.595
AAES_48148
2'-5'-oligoadenylate synthase-like protein 2-like protein.
    
 0.594
AAES_130990
Uncharacterized protein.
    
 0.594
AAES_80783
SUMO-conjugating enzyme UBC9 isoform X3; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.571
AAES_168908
Ubiquilin-4.
    
 0.567
ube2l3
Ubiquitin-conjugating enzyme E2L 3; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.565
AAES_108137
Stimulator of interferon genes protein.
    
  0.553
AAES_168229
BTB/POZ domain-containing protein KCTD2.
    
  0.553
Your Current Organism:
Amazona aestiva
NCBI taxonomy Id: 12930
Other names: A. aestiva, blue-fronted amazon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.