STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAES_12038E3 ubiquitin-protein ligase RBBP6. (1816 aa)    
Predicted Functional Partners:
AAES_92201
Pre-mRNA 3' end processing protein WDR33 isoform X3.
   
 0.994
AAES_40351
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.993
AAES_48325
WD repeat-containing protein 82.
    
 0.992
AAES_138441
E3 ubiquitin-protein ligase E3D.
    
 0.978
AAES_246276
Uncharacterized protein.
    
 
 0.965
AAES_63257
CPSF73-100_C domain-containing protein.
    
 0.944
AAES_63261
Cleavage and polyadenylation specificity factor subunit 3.
    
 0.944
AAES_02303
C3H1-type domain-containing protein.
    
 0.943
AAES_13034
Cleavage and polyadenylation specificity factor subunit 4 isoform X3.
    
 0.943
AAES_202922
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.936
Your Current Organism:
Amazona aestiva
NCBI taxonomy Id: 12930
Other names: A. aestiva, blue-fronted amazon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.