STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_00850Protein pucC; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
H663_00785
H subunit of photosynthetic reaction center complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
H663_00865
Hydroxyneurosporene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.865
H663_00750
2-vinyl bacteriochlorophyllide hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.826
H663_00735
Bacteriochlorophyll/chlorophyll a synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.825
H663_00795
Photosynthetic complex assembly protein PuhC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.824
chlL
Protochlorophyllide oxidoreductase; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
 
    0.823
bchN
Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.821
H663_00790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.819
pufL
Photosynthetic reaction center subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the reaction center PufL/M/PsbA/D family.
  
    0.819
pufM
Photosynthetic reaction center subunit M; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
    0.818
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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