STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_01340Nodulation protein NodJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
nodI
ABC transporter ATP-binding protein; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
 
 
 0.997
H663_08680
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.719
H663_08980
Protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.647
H663_17025
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.577
H663_17030
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.575
H663_08675
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.529
H663_10740
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.512
H663_03900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.493
H663_03595
Nitrobenzoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.484
H663_04150
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.484
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.