STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_03775Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
H663_03755
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.901
H663_03750
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.897
H663_03780
acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
 
  
  0.885
H663_11815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.796
H663_03345
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
  0.746
H663_03745
enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.735
H663_03770
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.711
H663_04170
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
H663_13505
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.624
H663_08110
acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.617
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.