STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_04460C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
H663_04455
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.939
H663_04465
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.925
garD
Galactarate dehydrogenase; Catalyzes the formation of 5-dehydro-4-deoxy-D-glucarate from D-galactarate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.729
H663_00305
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.707
H663_14470
L-dehydroascorbate transporter large permease subunit; TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.705
H663_03220
L-dehydroascorbate transporter large permease subunit; TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.698
H663_03255
L-dehydroascorbate transporter large permease subunit; TRAP family transporter; with YiaMO is involved in the uptake of L-dehydroascorbate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.686
H663_00295
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.660
H663_14475
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.646
H663_03210
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.644
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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