STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_10705Choline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)    
Predicted Functional Partners:
H663_18655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.797
H663_01625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.730
H663_04515
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.730
H663_09025
Pilus assembly protein PilF; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.730
H663_17060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.730
H663_17095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.730
H663_10700
Methylmalonate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.500
H663_06195
Cytochrome C oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.440
H663_02550
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.411
H663_02725
Cytochrome oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.409
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.