STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_12615Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
H663_12610
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.942
H663_12620
Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.931
H663_12605
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.887
H663_12585
NADH-ubiquinone oxidoreductase subunit 6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.862
H663_12590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.859
H663_08720
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.807
H663_12600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
H663_12595
Cyclopropane-fatty-acyl-phospholipid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
H663_12665
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.656
H663_07125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.562
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.