STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_12840Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)    
Predicted Functional Partners:
H663_15180
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.858
H663_02665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.817
H663_15175
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.789
mtgA
Peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
       0.775
H663_04550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.718
H663_12835
Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
H663_00220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.660
H663_09895
Outer membrane receptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.660
H663_14565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.660
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.