STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H663_13290Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)    
Predicted Functional Partners:
H663_05095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.814
H663_17190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.805
H663_13580
Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.791
H663_07000
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.788
H663_13275
Apocarotenoid-15,15'-oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
H663_13280
short-chain-fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
H663_13285
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
H663_05100
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.545
H663_13270
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.460
Your Current Organism:
Limnohabitans planktonicus
NCBI taxonomy Id: 1293045
Other names: L. planktonicus II-D5, Limnohabitans planktonicus II-D5, beta proteobacterium II-D5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.