STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMX83078.1Protease; Involved in the degradation of specific anti-sigma factors. Belongs to the protease PrsW family. (231 aa)    
Predicted Functional Partners:
AMX84802.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.690
AMX82681.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.682
AMX83079.1
Spore cortex-lytic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.633
AMX83077.1
L-asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
AMX83080.1
Germination protein YpeB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.584
AMX83076.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.502
AMX85222.1
Trans-hexaprenyltranstransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
Your Current Organism:
Geobacillus subterraneus
NCBI taxonomy Id: 129338
Other names: AS 12673, DSM 13552, Geobacillus subterraneus Nazina et al. 2001 emend. Poli et al. 2013, KCTC 3922, VKM B-2226, strain 34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.