STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GS3922_08965Electron transport protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
AMX83781.1
Spore gernimation protein GerQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
AMX85346.1
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.801
AMX85129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
AMX83852.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
AMX83556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
AMX82274.1
Murein biosynthesis protein MurJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
AMX84055.1
Cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.508
AMX83782.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
       0.496
AMX84275.1
Glutathione-dependent formaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.494
sspH
SASP H; spore coat; expressed in forespore compartment; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspH family.
  
     0.488
Your Current Organism:
Geobacillus subterraneus
NCBI taxonomy Id: 129338
Other names: AS 12673, DSM 13552, Geobacillus subterraneus Nazina et al. 2001 emend. Poli et al. 2013, KCTC 3922, VKM B-2226, strain 34
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.