STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO18615.1Hypothetical protein. (575 aa)    
Predicted Functional Partners:
KRO15046.1
Sugar ABC transporter, sugar-binding protein.
  
     0.520
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.508
rimM
16S rRNA-processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.461
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.461
KRO16190.1
Hypothetical protein.
  
     0.448
KRO17177.1
Hypothetical protein.
  
     0.423
KRO18617.1
Hypothetical protein.
       0.410
Your Current Organism:
Lactobacillus saniviri
NCBI taxonomy Id: 1293598
Other names: L. saniviri JCM 17471 = DSM 24301, Lactobacillus saniviri DSM 24301, Lactobacillus saniviri DSM 24301 = JCM 17471, Lactobacillus saniviri JCM 17471, Lactobacillus saniviri JCM 17471 = DSM 24301, Lactobacillus saniviri YIT 12363, Lactobacillus sp. YIT 12363
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.