STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO17709.1Lyzozyme M1 (1,4-beta-N-acetylmuramidase). (344 aa)    
Predicted Functional Partners:
KRO16006.1
Hypothetical protein.
  
     0.587
KRO17708.1
Hypothetical protein.
       0.584
KRO16133.1
Hypothetical protein.
 
     0.549
KRO17275.1
Hypothetical protein.
  
     0.541
KRO15484.1
GtcA family membrane protein.
  
     0.518
KRO16574.1
Hypothetical protein.
  
     0.496
KRO16908.1
Acyltransferase 3.
  
     0.494
KRO15499.1
Hypothetical protein.
  
     0.486
KRO18866.1
Alpha beta hydrolase superfamily protein.
  
     0.462
KRO16909.1
Cell surface hydrolase.
  
     0.405
Your Current Organism:
Lactobacillus saniviri
NCBI taxonomy Id: 1293598
Other names: L. saniviri JCM 17471 = DSM 24301, Lactobacillus saniviri DSM 24301, Lactobacillus saniviri DSM 24301 = JCM 17471, Lactobacillus saniviri JCM 17471, Lactobacillus saniviri JCM 17471 = DSM 24301, Lactobacillus saniviri YIT 12363, Lactobacillus sp. YIT 12363
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